Abell J, McBride C, Hamilton D. 2018. Lake water quality modelling to estimate sustainable nutrient loads to Lake Tarawera. ERI Report No. 112. Environmental Research Institute, Faculty of Science and Engineering, The University of Waikato, Hamilton, New Zealand. http://www.waikato.ac.nz/eri/research/publications

Abell J, van Dam-Bates P. 2018. Modelling Reference and Current Trophic Level Index for NewZealand Lakes. Consultant's report prepared for the University of Waikato by EcofishResearch Ltd, Ecofish Research Ltd., Courtenay, B.C. pp 70.

Allan MG, Hamilton DP, Muraoka K. 2018. A coupled hydrodynamic-ecological model to test management options for restoration of lakes Onoke and Wairarapa. ERI Report No. 111. Environmental Research Institute, Faculty of Science and Engineering, The University of Waikato, Hamilton, New Zealand. http://www.waikato.ac.nz/eri/research/publications

Ballot A, Scherer P, Wood SA. 2018. Variability in the anatoxin gene clusters of Cuspidothrix issatschenkoi from Germany, New Zealand, China and Japan. PloS one 13(7): e0200774.

Bertone E, Burford MA, Hamilton DP 2018. Fluorescence probes for real-time remote cyanobacteria monitoring: a review of challenges and opportunities. Water Research 141: 152-162.

Bruce LC, Frassl MA, Arhonditsis GB, Gal G, Hamilton DP, Hanson PC, ...  Rigosi A. 2018. A multi-lake comparative analysis of the General Lake Model (GLM): Stress-testing across a global observatory network. Environmental Modelling & Software 102: 274-291.

Burford MA, Hamilton DP, Wood SA. 2018. Chapter 20: Emerging HAB research issues in freshwater environments. In: The Global Ecology and Oceanography of Harmful Algal Blooms. Gilber et al. (eds). Springer International Publishing.

Collier KJ, Clearwater SJ, Neijenhuis PH, Wood SA. 2018. Factors influencing biodeposit production by the New Zealand freshwater mussel Echyridella menziesii. New Zealand Journal of Marine and Freshwater Research, 52(1), 1-15.

Collier KJ, Pingram MA, Francis L, Garrett?Walker J, Melchior M. 2018. Trophic overlap between non?native brown bullhead (Ameiurus nebulosus) and native shortfin eel (Anguilla australis) in shallow lakes. Ecology of Freshwater Fish.  https://doi.org/10.1111/eff.12400

Dada AC, Hicks, BJ, Ling N, Hamilton DP. 2018. Assessment of effects of proposed treated wastewater discharge to the Te Arikiroa Thermal Channel and Sulphur Bay (Lake Rotorua). ERI Report No. 91. Client report prepared for Rotorua Lakes Council.  Environmental Research Institute, The University of Waikato. http://www.waikato.ac.nz/eri/research/publications

Duggan IC, Champion PD,  MacIsaac HJ. 2018. Invertebrates associated with aquatic plants bought from aquarium stores in Canada and New Zealand. Biological Invasions 20: 3167-3178.

Eivers RS, Duggan IC, Hamilton DP, Quinn JM. 2018. Constructed treatment wetlands provide habitat for zooplankton communities in agricultural peat lake catchments. Wetlands 38: 95-108.

Hicks BJ, Allan MG. 2018. Estimation of potential contributions of brown bullhead catfish to the nutrient budgets of lakes Rotorua and Rotoiti. ERI Report No. 115. Client report prepared for the Bay of Plenty Regional Council. Environmental Research Institute, Faculty of Science and Engineering, The University of Waikato, Hamilton, New Zealand. http://www.waikato.ac.nz/eri/research/publications

Hodges CM, Wood SA, Puddick J, McBride CG, Hamilton DP. 2018. Sensor manufacturer, temperature, and cyanobacteria morphology affect phycocyanin fluorescence measurements. Environmental Science and Pollution Research, 25(2), 1079-1088. https://doi.org/10.1007/s10750-018-3603-2

Hughes A. 2018. Matahuru Stream water quality monitoring - data report. Prepared for Waikato Regional Council. NIWA Client Report No: 2018148HN. NIWA, Hamilton, New Zealand.

Jones HFE, Ozkundakci D, McBride CG, Pilditch CA, Allan MG, Hamilton DP. 2018. Modelling interactive effects of multiple disturbances on a coastal lake ecosystem: Implications for management. Journal of Environmental Management 207: 444-455.

Leach TH, Beisner BE, Carey CC, Pernica P, Rose KC, Huot Y, Anneville O, Brentrup JA, Domaizon I, Grossart HP, Ibelings B, Kelly PT, Jacquet S, Rusak J, Straile D, Stockwell J, Verburg P. 2018. Patterns and drivers of deep chlorophyll maxima structure in 100 lakes: the relative importance of light and thermal stratification. Limnology & Oceanography 63(2): 628-646.

Lehmann M, Nguyen U, Allan M, van der Woerd H. 2018. Colour classification of 1486 lakes across a wide range of optical water types. Remote Sensing 10(8): 1273.

Li M, Xiao M, Zhang P, Hamilton DP. 2018. Morphospecies-dependent disaggregation of colonies of the cyanobacterium Microcystis under high turbulent mixing. Water Research 141: 340-348.

Luo L, Hamilton D, Lan J, McBride C, Trolle D. 2018. Autocalibration of a one-dimensional hydrodynamic-ecological model (DYRESM 4.0-CAEDYM 3.1) using a Monte Carlo approach: simulations of hypoxic events in a polymictic lake. Geoscientific Model Development 11(3): 903.

Me W, Hamilton DP, McBride CG, Abell JM, Hicks BJ. 2018. Modelling hydrology and water quality in a mixed land use catchment and eutrophic lake: Effects of nutrient load reductions and climate change. Environmental Modelling and Software 109: 114-133. 

Ă–zkundakci D, Allan MG. 2018. Patterns and drivers of spatio-temporal variability of suspended sediment in the Waikato lakes, New Zealand. New Zealand Journal of Marine and Freshwater Research 1-19. DOI: 10.1080/00288330.2018.1531895

Pearson AAC, Duggan IC. 2018. A global review of zooplankton species in freshwater aquaculture ponds: what are the risks for invasion? Aquatic Invasions 13: 311-322.

Shell TM, Collier KJ. 2018. Partitioning of macroinvertebrate communities in a large New Zealand river highlights the role of multiple shore-zone habitat types. River Research and Applications 34(8): 993-1002. doi:10.1002/rra.3344

Stewart SD, Hamilton DP, Baisden WT, Verburg P. 2018. The role of mobile consumers in lake nutrient cycles: a brief review. Hydrobiologia 818: 11-29.

Tempero GW. 2018. Addendum to ecotoxicological review of alum applications to the Rotorua lakes. ERI Report No. 117. Client report prepared for Bay of Plenty Regional Council. Environmental Research Institute, Faculty of Science and Engineering, University of Waikato, Hamilton, New Zealand. http://www.waikato.ac.nz/eri/research/publications

Verburg P, Albert A. 2018. Lake Taupo long-term monitoring programme, 2016 - 2017. Prepared for Waikato Regional Council. NIWA report 2018153HN. NIWA, Hamilton, New Zealand. 163 pp.

Verburg P, Albert A, Guildford S, Hecky R. 2018. Phytoplankton nutrient limitation in the Waikato River from Lake Taupo to the estuary. Prepared for DairyNZ. NIWA report 2018117HN. NIWA, Hamilton, New Zealand. 106 pp.

Wang S, Li J, Zhang B, Spyrakos E, Tyler AN, Shen Q, Zhang F, Kuster T, Lehmann M, Wu Y, Peng D. 2018. Trophic state assessment of global inland waters using a MODIS-derived Forel-Ule index. Remote Sensing of Environment 217: 444-460.

Waters S, Kelly D, Vandergoes M, Rees A, Li X, Cochran L, Homes A. 2018. Lake Wairarapa - investigating historic reference state, present-day macrophyte communities and legacy nutrients in the lake sediment. Prepared for Greater Wellington Regional Council. Cawthron Report No. 3157. Cawthron Institute, Nelson, New Zealand. 56 pp

Woolway I, Verburg P, Lenters J, Merchant C, Hamilton D, Brookes J, de Eyto E, Kelly S, Healey N, Hook S, Laas A, Pierson D, Rusak J, Kuha J, Karjalainen J, Kallio K, Lepisto A, Jones, I. 2018. Geographic and temporal variations in turbulent heat loss from lakes: a global analysis across 45 lakes. Limnology and Oceanography 63(6): 2436-2449. doi: https://doi.org/10.1002/lno.10950.

Zhang H, Lyu T, Bi L, Tempero G, Hamilton DP, Pan G. 2018. Combating hypoxia/anoxia at sediment-water interfaces: A preliminary study of oxygen nanobubble modified clay materials. Science of The Total Environment 637: 550-560.