Watson NN, Duggan IC, Collins GE, Beet CR, Woods SM, Banks JC, Hogg ID. nd [2014]. A Molecular-Based Assessment Tool for Characterising New Zealand Freshwater Zooplankton Communities. ERI Report No. 39. Client report prepared for Lake Ecosystem Restoration New Zealand. Environmental Research Institute, University of Waikato, Hamilton.

Pingram MA, Collier KJ, Hamilton DP, David BO. In press - 2014. High intensity data survey and multivariate statistics reveal ecological zones along the longitudinal profile of a large, temperate, lowland river.River Systems.

Trolle D, Spigel B, Hamilton DP, Norton N, Sutherland D, Plew D, Allan MG. In press - 2014. Application of a three-dimensional water quality model as a decision support tool for the management of land-use changes in the catchment of an oligotrophic lake. Environmental management 54 (3): 479-493. [Online 2014 Jun 19]. DOI: 10.1007/s00267-014-0306-y

Abell JM, Hamilton DP. 2014. Biogeochemical processes and phytoplankton nutrient limitation in the inflow transition zone of a large eutrophic lake during a summer rain event.Ecohydrology [online: 20 May 2014]. DOI: 10.1002/eco.1503

Akyuz DE, Luo LC, Hamilton DP. 2014. Temporal and spatial trends in water quality of Lake Taihu, China: analysis from a north to mid-lake transect, 1991-2011. Environmental Monitoring and Assessment 186 (6): 3891-3904.DOI: 10.1007/s10661-014-3666-0

Allan M. 2014. Remote sensing, numerical modelling and ground truthing for analysis of lake water quality and temperature.PhD thesis, University of Waikato, Hamilton. http://researchcommons.waikato.ac.nz/handle/10289/8513

Banks JC, Hogg ID. 2014. Development and validation of hydrolysis assays for seven species of exotic fish. ERI Report No. 44. Client report prepared for Lake Ecosystem Restoration New Zealand (LERNZ).  Environmental Research Institute, Faculty of Science and Engineering, University of Waikato, Hamilton. 18 pp.

Banks JC, Watson N, Hogg ID. 2014. Comparison of the efficiency of three methods of isolating fish DNA from environmental samples. ERI Report No. 45. Client report prepared for Lake Ecosystem Restoration New Zealand (LERNZ).  Environmental Research Institute, Faculty of Science and Engineering, University of Waikato, Hamilton.

Brookes JD, Carey CC, Hamilton DP, Ho L, van der Linden L, Renner R, Rigosi A. 2014. Emerging Challenges for the Drinking Water Industry. Environmental Science and Technology 48 (4): 2099-2101. DOI: 10.1021/es405606t

Cary SC, Coyne KJ, Rueckert A, Wood SA, Kelly S, Gemmill CE, Vieglais C, Hicks BJ. 2014. Development and validation of a quantitative PCR assay for the early detection and monitoring of the invasive diatom Didymosphenia geminata. Harmful Algae 36: 63-70. DOI: 10.1016/j.hal.2014.04.003

Cirés S, Roa CA, Wood SA, Puddick J, Loza V, Heimann K. 2014. First report of microcystin-producing Fischerella sp.(Stigonematales, Cyanobacteria) in tropical Australia. Toxicon 88: 62-66. [Online Jun 18 2014]. doi: 10.1016/j.toxicon.2014.06.010. 

Clearwater SJ, Wood SA, Ginkel Rv, Phillips NR, Parkyn SM. 2014. Toxicity thresholds for juvenile freshwater mussels Echyridella menziesii and crayfish Paranephrops planifrons, after acute cell-free, or chronic dietary exposure to microcystin-containing crude extracts from Microcystis sp. Environmental Toxicology 29 (5): 487-502. DOI: 10.1002/tox.21774.

Collier K, Clapcott J, Neale M. 2014. A macroinvertebrate attribute to assess ecosystem health of New Zealand waterways for the National Objectives Framework: Issues and Options. ERI Report No. 36. Client report prepared for Ministry for the Environment. Environmental Research Institute, University of Waikato, Hamilton.

Collier K, Death R, Hamilton D, Quinn J. 2014. Potential sciences tools to support Mahinga Kai decision making in the National Objectives Framework.  ERI Report No. 37. Environmental Research Institute, Faculty of Science and Engineering, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications

Eaton-Rye JJ, Packer MA, Summerfield TC, Wood SA. 2014. Algal and cyanobacterial bioenergy and diversity. Introduction. New Zealand Journal of Botany: 52 (1, Special Issue): 1-5. DOI: 10.1080/0028825X.2013.877947

Gorski K, Collier KJ, Hamilton DP, Hicks BJ. 2014. Effects of flow on lateral interactions of fish and shrimps with off-channel habitats in a large river-floodplain system. Hydrobiologia 729 (1): 161-174 [online 4 Dec 2012]. DOI: 10.1007/s10750-012-1352-1

Hamilton DP, Wood SA, Dietrich DR, Puddick J. 2014. Costs of harmful blooms of freshwater cyanobacteria. IN: Sharma NK, Rai AK, Stal LJ (eds.) Cyanobacteria, John Wiley and Sons, Ltd. pp. 245-256.

Hicks BJ, Bell DG, Powrie W. 2014. Boat electrofishing survey of the Kaituna River and Bell Road oxbow. ERI Report No. 46. Client report prepared for Department of Conservation and Bay of Plenty Regional Council. Environmental Research Institute, Faculty of Science and Engineering, University of Waikato, Hamilton. 16 pp.

Hicks BJ, Bell DG, Tana R. 2014. Boat electrofishing survey of fish abundance in the Ohau Channel, Rotorua, in 2013. ERI Report No. 47. Client report prepared for Bay of Plenty Regional Council. Environmental Research Institute, Faculty of Science and Engineering, University of Waikato, Hamilton. 

Jones HFE, Hamilton DP. 2014. Lake Whangape and Lake Waahi hydrodynamic modelling. ERI Report No. 31. Client report prepared for Waikato Regional Council. Environmental Research Institute, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications

Jones HFE, Özkundakci D, Kochendoerfer S, McBride C, Hamilton D. 2014. Lake Rotokakahi water quality modelling. ERI Report No. 32. Client report prepared for Bay of Plenty Regional Council. Environmental Research Institute, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications

Kuhajek JM, Lemoine M, Kilroy C, Cary SC, Gerbeaux P, Wood SA. 2014. Laboratory study of the survival and attachment of Didymosphenia geminata (Bacillariophyceae) in water sourced from rivers throughout New Zealand. Phycologia 53 (1): 1-9. DOI: 10.2216/13-145.1

Li W, Hicks BJ, Guo CB, Li ZJ, Liu JS, Zhang TL. 2014. Does hatchery-reared Siniperca chuatsi (Actinopterygii, Perciformes) compete significantly with two wild Siniperca populations for diets in a shallow lake? Hydrobiologia 741 (1): 125-138. DOI: 10.1007/s10750-014-1866-9

Morgan DKJ, Kumar H, Ling N, Hicks BJ. 2014. Toxicity effects of oral gavage of aqueous solutions of cube-root powder and sodium nitrite in common carp. Wildlife Research 40 (8): 647-653. DOI: 10.1071/WR12214

Mulling BTM, Wood SA, Hamilton DP. 2014. Intra-colony motility of Microcystis wesenbergii cells. New Zealand Journal of Botany 52 (1): 153-159. DOI: 10.1080/0028825X.2013.861856

Özkundakci D, Hamilton D, Kelly D, Schallenberg M, de Winton M, Verburg P, Trolle D. 2014. Ecological integrity of deep lakes in New Zealand across anthropogenic pressure gradients. Ecological Indicators 37: 45-57. DOI: 10.1016/j.ecolind.2013.10.005

Ozkundakci D, Hamilton DP, McDowell R, Hill S. 2014. Phosphorus dynamics in sediments of a eutrophic lake derived from P-31 nuclear magnetic resonance spectroscopy. Marine and Freshwater Research 65 (1): 70-80. DOI: 10.1071/MF13033

Özkundakci D, Pearson L, McBride CG, Hamilton DP. 2014. Lake Rotorua sediment survey. ERI Report No. 41. Client report prepared for the Bay of Plenty Regional Council. Environmental Research Institute, Faculty of Science and Engineering, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications

Pingram M. 2014. Food webs in the lower Waikato River and the role of hydrogeomorphic complexity.PhD thesis, University of Waikato, Hamilton. http://researchcommons.waikato.ac.nz/handle/10289/8529

Pingram MA, Collier KJ, Hamilton DP, Hicks BJ, David BO. 2014. Spatial and temporal patterns of carbon flow in a temperate, large river food web. Hydrobiologia 729 (1): 107-131 [online 1 Dec 2012]. DOI: 10.1007/s10750-012-1408-2

Refsgaard JC, Madsen H, Andreassian V, Arnbjerg-Nielsen K, Davidson TA, Drews M, Hamilton DP, Jeppesen E, Kjellstrom E, Olesen JE, Sonnenborg TO, Trolle D, Willems P, Christensen JH. 2014. A framework for testing the ability of models to project climate change and its impacts. Climatic Change 122 (1-2): 271-282. DOI: 10.1007/s10584-013-0990-2

Rogers S. 2014. Investigation of Microcystin Processing, Production and Export by Microcystis sp. MSc thesis, University of Waikato, Hamilton. http://researchcommons.waikato.ac.nz/handle/10289/8777

Rose KC, Hamilton DP, Williamson CE, McBride CG, Fischer JM, Olson MH, Saros JE, Allan MG, Cabro N. 2014. Light attenuation characteristics of glacially?fed lakes.Journal of Geophysical Research-Biogeosciences 119 (7): 1446-1457. DOI: 10.1002/2014JG002674

Tempero GW, Hamilton D. 2014. Storm Water Inflow to Oranga Lake, University of Waikato Hamilton Campus. ERI Report No. 33. Client report prepared for Facilities Management Division of the University of Waikato. Environmental Research Institute, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications

Trolle D, Elliott JA, Mooij WM, Janse JH, Bolding K, Hamilton DP, Jeppesen E. 2014. Advancing projections of phytoplankton responses to climate change through ensemble modelling. Environmental Modelling and Software 61: 371-379. [online 28 February 2014]. DOI: 10.1016/j.envsoft.2014.01.032

Wood SA, Goodwin E, Hamilton DP. 2014. National Objectives Framework for Freshwater: An assessment of banding statistics for planktonic cyanobacteria. Cawthron Report No. 2493. A report prepared for the Ministry for the Environment, Cawthron Institute, Nelson.

Wood SA, Pochon X, Luttringer-Plu L, Vant BN, Hamilton DP. 2014. Recent invader or indicator of environmental change? A phylogenetic and ecological study of Cylindrospermopsis raciborskii in New Zealand.Harmful Algae 39: 64-74. [online July 2014]. DOI: 10.1016/j.hal.2014.06.013