Abell JM, Hamilton DP, Paterson J. 2011. Reducing the external environmental costs of pastoral farming in New Zealand: experiences from the Te Arawa lakes, Rotorua.Australasian Journal of Environmental Management 18 (3): 139-154.DOI: 10.1080/14486563.2011.591520

Abell JM, Hamilton DP. 2011. Spot sampling of nutrient concentrations in the Puarenga catchment, Rotorua.CBER Contract Report No. 122. For Tuhourangi Tribal Authority. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Abell JM, Özkundakci D,Hamilton DP, Miller S. 2011. Relationships between land use and nitrogen and phosphorus in New Zealand lakes. Marine and Freshwater Research 62 (2): 162-175.DOI: 10.1071/MF10180

Allan M, Hamilton D, Hicks BJ, Brabyn L. 2011. Landsat remote sensing of chlorophyll a concentrations in central North Island lakes of New Zealand.International Journal of Remote Sensing 32 (7): 2037-2055. DOI: 10.1080/01431161003645840

Ashraf MS. 2011. Enhancing spatial resolution of remotely sensed data for mapping freshwater environments. PhD thesis, University of Waikato, Hamilton. 132p. http://researchcommons.waikato.ac.nz/handle/10289/5831

Bruesewitz D, Hamilton DP, Schipper LA. 2011. Denitrification potential in lake sediment increases across a gradient of catchment agriculture.Ecosystems 14 (3): 341-352. DOI: 10.1007/s10021-011-9413-2

Collier KJ, Clements BL. 2011. Influences of catchment and corridor imperviousness on urban stream macroinvertebrate communities at multiple spatial scales.Hydrobiologia 664 (1): 35-50. DOI: 10.1007/s10750-010-0580-5.

Daniel AJ, Hicks BJ, Ling N, David BO. 2011. Movements of radio- and acoustic-tagged adult common carp (Cyprinus carpio L.) in the Waikato River, New Zealand.North American Journal of Fisheries Management 31 (2): 352-362. DOI: 10.1080/02755947.2011.576205

Daniel AJ, Morgan DKJ. 2011. Lake Ohinewai pest fish removal.CBER Contract Report No. 120. For Department of Conservation (Waikato Conservancy). Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Dennis MA, Landman M, Wood SA, Hamilton DP. 2011. Application of flow cytometry for examining phytoplankton succession in two eutrophic lakes. Water Science and Technology 64 (4): 999-1008.DOI: 10.2166/wst.2011.099

Dennis MA. 2011. The role of viral systems in nutrient cycling. MSc thesis, Biological Sciences, University of Waikato, Hamilton. 148p. http://researchcommons.waikato.ac.nz/handle/10289/6017

Duggan IC, Duggan KS. 2011. Are botanical gardens a risk for zooplankton invasions?Biological Invasions 13 (12): 2997-3003. DOI: 10.1007/s10530-011-9984-z

Duggan IC. 2011. Aquaria.IN: Simberloff D, Rejmanek M (eds.) Encyclopedia of Biological Invasions. University of California Press, pp. 32-35.

Gibbs M, Özkundakci D. 2011. Effects of a modified zeolite on P and N processes and fluxes across the lake sediment-water interface using core incubations. Hydrobiologia 661 (1): 21-35. DOI: 10.1007/s10750-009-0071-8

Gibbs MM, Hickey CW, Özkundakci D. 2011. Sustainability assessment and comparison of efficacy of four P-inactivation agents for managing internal phosphorus loads in lakes: sediment incubations. Hydrobiologia 658 (1): 253-275. DOI: 10.1007/s10750-010-0477-3

Ginders MA. 2011. The influence of connectivity on the functional role of a natural and re-constructed side-arm in the lower Waikato River. MSc thesis, Biological Sciences, University of Waikato, Hamilton. 136p. http://researchcommons.waikato.ac.nz/handle/10289/5333

Hamilton DP, Landman MJ (ALSO Volume eds). 2011. Preface: Lake restoration: an experimental ecosystem approach for eutrophication control. Hydrobiologia 661 (1): 1-3. DOI: 10.1007/s10750-010-0560-9

Hanson PC, Hamilton DP, Stanley EH, Preston N, Langman OC, Kara EL. 2011. Fate of Allochthonous Dissolved Organic Carbon in Lakes: A Quantitative Approach. PLos ONE 6 (7): e21884. DOI: 10.1371/journal.pone.0021884

Hicks BJ, Baker C, Tana R, Powrie W, Bell D. 2011. Boat electrofishing of the Waikato River upstream and downstream of the Huntly Power Station: spring 2010.CBER Contract Report No. 115. For Genesis Energy. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Hicks BJ, Blair JM, Tana R.2011. The effect of the Ohau Channel diversion wall on movement of rainbow trout and common smelt between Lake Rotoiti and Lake Rotorua using otolith chemical signatures: a summary of collections from 2005 to 2010.CBER Contract Report No. 123. For Environment Bay of Plenty. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton.http://www.waikato.ac.nz/eri/research/publications/cber-reports

Hicks BJ, Ling N, Daniel AJ. 2011. Cyprinus carpio L. (Common carp). IN: Francis, Robert. A (ed.) A Handbook of Global Freshwater Invasive Species, pp. 247-260.

Hopkins A. 2011. Is there a lack of science resources and specialists for kaiako at Kura reo o Waikato? CBER Contract Report No. 114. For Waikato-Tainui Raupatu Lands Trust. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. 32p. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Johnston T. 2011. Comparison of riparian willows and riprap as habitat for fish and invertebrates in the Waikato River. MSc thesis, University of Waikato, Hamilton. 146p.http://researchcommons.waikato.ac.nz/handle/10289/5530

Kelly CL. 2011. Charophyte response to herbicide and mycoherbicide applicatiions. MSc thesis, University of Waikato, Hamilton. 126p. http://researchcommons.waikato.ac.nz/handle/10289/5334

Landman MJ, Ling N 2011. Fish health changes in Lake Okaro, New Zealand: effects of nutrient remediation, season or eutrophication? Hydrobiologia 661 (1): 65-79. DOI: 10.1007/s10750-010-0315-7

Lucena-Moya P, Duggan IC. 2011. Macrophyte architecture affects the abundance and diversity of littoral microfauna.Aquatic Ecology 45 (2): 279-287. DOI: 10.1007/s10452-011-9353-0

Muraoka K, Paul W, Hamilton DP, von Westerhagen N. 2011. Effect of different operational regimes of Okere Gates on the effectiveness of the Ohau Channel diversion wall in Lake Rotoiti.  CBER Contract Report No. 119. For Environment Bay of Plenty. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. 39p.http://www.waikato.ac.nz/eri/research/publications/cber-reports

Özkundakci D, Duggan IC, Hamilton DP. 2011. Does sediment capping have post-application effects on zooplankton and phytoplankton? Hydrobiologia 661 (1): 55-64. DOI: 10.1007/s10750-009-9938-y

Özkundakci D, Hamilton D, Gibbs M. 2011. Hypolimnetic phosphorus and nitrogen dynamics in a small, eutrophic lake with a seasonally anoxic hypolimnion. Hydrobiologia 661 (1): 5-20. DOI: 10.1007/s10750-010-0358-9

Özkundakci D, Hamilton DP, Trolle D. 2011. Modelling the response of a highly eutrophic lake to reductions in external and internal nutrient loading. New Zealand Journal of Marine and Freshwater Research 45 (2): 165-185. DOI: 10.1080/00288330.2010.548072

Paul W, McBride C, Hamilton DP, Hopkins A, Özkundakci D. 2011. Modeled restoration scenarios for Lake Hakanoa. CBER Contract Report No. 118. For Waikato District Council. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Read JS, Hamilton DP, Jones ID, Muraoka K, Winslow LA, Kroiss R, Wu CH, Gaiser E. 2011. Derivation of lake mixing and stratification indices from high-resolution lake buoy data. Environment Modelling and Software 26 (11): 1325-1336. DOI: 10.1016/j.envsoft.2011.05.006

Read JS, Muraoka K. 2011. LakeAnalyzer - Ver.3.x. User Manual.User manual for Lake Analyzer Program.

Simmonds BM. 2011. Spatial and temporal trends of phytoplankton and physiochemical variables in a hypertrophic monomicitic lake. MSc thesis, Biological Sciences, University of Waikato, Hamilton. http://researchcommons.waikato.ac.nz/handle/10289/6031

Tana R, Hicks BJ.2011. Boat electrofishing survey of common smelt and common bully in the Ohau Channel in December 2010.CBER Contract Report No. 124. For Bay of Plenty Regional Council. Centre for Biodiversity and Ecology Research School of Science and Engineering, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Tempero GW. 2011. Abundance and function of multiple haemoglobin isomorphs from rainbow trout (Onorhynchus mykiss). PhD thesis, University of Waikato, Hamilton. http://researchcommons.waikato.ac.nz/handle/10289/5946

Trolle D, Hamilton DP, Pilditch CA, Duggan IC, Jeppesen E. 2011. Predicting the effects of climate change on trophic status of three morphologically varying lakes: Implications for lake restoration and management.Environmental Modelling and Software 26 (4): 354-370. DOI: 10.1016/j.envsoft.2010.08.009

Wood SA, Dietrich DR. 2011. Quantitative assessment of aerosolized cyanobacterial toxins at two New Zealand lakes. Journal of Environmental Monitoring13 (6): 1617-1624. DOI: 10.1039/c1em10102a

Wood SA, Rueckert A, Hamilton DP, Cary SC, Dietrich DR. 2011. Switching toxin production on and off: intermittent microcystin synthesis in a Microcystis bloom. Environmental Microbiology 3 (1): 118-124. DOI: 10.1111/j.1758-2229.2010.00196.x