Abell JM, Özkundakci D, Hamilton DP. 2010. Nitrogen and phosphorus limitation of phytoplankton growth in New Zealand lakes: Implications for eutrophication control.Ecosystems 13 (7): 966-977.DOI: 10.1007/s10021-010-9367-9

Allibone R, David B, Hitchmough R, Jellyman D, Ling N, Ravenscroft P, Waters J. 2010. Conservation status of New Zealand freshwater fish, 2009. New Zealand Journal of Marine and Fresh-water Research 44 (4): 271-287. DOI: 10.1080/00288330.2010.514346.

Ashraf S, Brabyn L, Hicks B, Collier K. 2010. Satellite remote sensing for mapping vegetation in New Zealand freshwater environments: a review.New Zealand Geographer 66 (1): 33-43.DOI: 10.1111/j.1745-7939.2010.01168.x

Blair JM,  Hicks BJ. 2010. Assessing movement of rainbow trout and common smelt between Lake Rotoiti and Lake Rotorua using otolith chemical signatures: a summary of collections in 2008 and 2009.  CBER Contract Report No. 105. For Environment Bay of Plenty. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. 26pp. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Brijs J, Hicks BJ, Bell DG. 2010. Boat electrofishing survey of common smelt and common bully in the Ohau Channel in December 2009.CBER Contract Report No. 112. For Environment Bay of Plenty. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Collier KJ, Hamilton DP, Vant W, Howard-Williams C (eds). 2010. The Waters of the Waikato: Ecology of New Zealand's longest river. Environment Waikato and the Centre for Biodiversity and Ecology Research (The University of Waikato) Publishers, 292 p. http://freshwater.science.org.nz/index.php/publications/books/the-waters-of-the-waikato-ecology-of-new-zealands-longest-river/

Collier KJ, Hicks BJ. 2010. Mysid shrimps in riverine lakes. IN: Collier KJ, Hamilton D, Vant W, Howard-Williams C (ed.s). The Waters of the Waikato: Ecology of New Zealand's longest river. Environment Waikato and Centre for Biodiversity and Ecology Research (University of Waikato). p257.

Collier KJ, Hogg ID. 2010. Macroinvertebrates. IN: Collier KJ, Hamilton D, Vant W, Howard-Williams C (ed.s). The Waters of the Waikato: Ecology of New Zealand's longest river. Environment Waikato and Centre for Biodiversity and Ecology Research (University of Waikato). Chapter 9. 173-192.

Collier KJ, Watene-Rawiri E, McCraw J. 2010. Geography and history. IN: Collier KJ, Hamilton D, Vant W, Howard-Williams C (ed.s). The Waters of the Waikato: Ecology of New Zealand's longest river. Environment Waikato and Centre for Biodiversity and Ecology Research (University of Waikato). Chapter 1. p1-12.

Collier KJ. 2010. Freshwater mussels as bioindicators. IN: Collier KJ, Hamilton D, Vant W, Howard-Williams C (ed.s). The Waters of the Waikato: Ecology of New Zealand's longest river. Environment Waikato and Centre for Biodiversity and Ecology Research (University of Waikato). p183.

Collier KJ. 2010. Rare and endangered macroinvertebrates. IN: Collier KJ, Hamilton D, Vant W, Howard-Williams C (ed.s). The Waters of the Waikato: Ecology of New Zealand's longest river. Environment Waikato and Centre for Biodiversity and Ecology Research (University of Waikato). p183.

Cornelisen C, Cary SC. 2010. Developing remote sensing capabilities in New Zealand aquatic environments. Cawthron Report 1735. Report to Royal Society - ISAT funding for AUV, Cawthron Institute, Nelson.

Daniel AJ. 2010. Detecting exploitable stages in the life history of koi carp (Cyprinus carpio) in New Zealand. PhD thesis, University of Waikato, Hamilton. 149p.http://researchcommons.waikato.ac.nz/handle/10289/3970

David BO, Hamer MP, Collier KJ, Lake MD, Surrey GM, McArthur K, Nicholson C, Perrie A, Dale, M. 2010. A standardised sampling protocol for robust assessment of reach-scale fish community diversity in wadeable New Zealand streams. New Zealand Journal of Marine and Freshwater Research 44 (3): 177-187. DOI: 10.1080/00288330.2010.498090

Duggan IC, White MA. 2010. Consequences of human-mediated marine intrusions on the zooplankton community of a temperate coastal lagoon.New Zealand Journal of Marine and Freshwater Research 44 (1): 17-28. DOI: 10.1080/00288331003641661

Duggan IC. 2010. The freshwater aquarium trade as a vector for incidental invertebrate fauna.Biological Invasions 12 (11): 3757-3770. DOI: 10.1007/s10530-010-9768-x

Duggan IC. 2010. Zooplankton invaders. IN: Collier KJ, Hamilton D, Vant W, Howard-Williams C (ed.s). The Waters of the Waikato: Ecology of New Zealand's longest river. Environment Waikato and Centre for Biodiversity and Ecology Research (University of Waikato). p122.

Duggan IC. 2010. Geothermal invertebrates. IN: Collier KJ, Hamilton D, Vant W, Howard-Williams C (ed.s). The Waters of the Waikato: Ecology of New Zealand's longest river. Environment Waikato and Centre for Biodiversity and Ecology Research (University of Waikato). p175.

Hamilton DP, Duggan IC. 2010. Plankton.IN: Collier KJ, Hamilton D, Vant W, Howard-Williams C (ed.s). The Waters of the Waikato: Ecology of New Zealand's longest river. Environment Waikato and Centre for Biodiversity and Ecology Research (University of Waikato). Part 3 (7) pp 117-152.

Hamilton DP, O'Brien KR, Burford MA, Brookes JD, McBride CG. 2010. Vertical distributions of chlorophyll in deep, warm monomictic lakes. Aquatic sciences 72 (3): 295-307. DOI: 10.1007/s00027-010-0131-1

Hamilton DP, Parparov A. 2010. Comparative assessment of water quality with the trophic level index and the Delphi method in Lakes Rotoiti and Rotorua, New Zealand.Water Quality Research Journal of Canada 45 (4): 479-489.

Hamilton DP, Paul W, McBride C, Immenga D. 2010. Water flow between Ohau Channel and Lake Rotoiti following implementation of the diversion wall. Part B. CBER Contract Report No. 116. For Environment Bay of Plenty. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Hamilton DP, Vant W, Neilson K. 2010. Lowland lakes.IN: Collier KJ, Hamilton D, Vant W, Howard-Williams C (ed.s). The Waters of the Waikato: Ecology of New Zealand's longest river. Environment Waikato and Centre for Biodiversity and Ecology Research (University of Waikato). Chapter 13. pp. 245-264.

Hamilton DP. 2010. Temperature stratification in lowland lakes. IN: Collier KJ, Hamilton D, Vant W, Howard-Williams C (ed.s). The Waters of the Waikato: Ecology of New Zealand's longest river. Environment Waikato and Centre for Biodiversity and Ecology Research (University of Waikato). p64.

Hicks BJ, Ling N, Wilson B. 2010. Introduced fish.IN: Collier KJ, Hamilton D, Vant W, Howard-Williams C (ed.s). The Waters of the Waikato: Ecology of New Zealand's longest river. Environment Waikato and Centre for Biodiversity and Ecology Research (University of Waikato). Chapter 11. pp. 209-228.

Hicks BJ, Tempero GW. 2010. Comparative boat electrofishing surveys of Lake Waahi in 2007 and 2011.CBER Contract Report No. 117. For Genesis Energy. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Hicks BJ. 2010. Source of photosynthetic carbon: evidence from stable isotopes. IN: Collier KJ, Hamilton D, Vant W, Howard-Williams C (ed.s). The Waters of the Waikato: Ecology of New Zealand's longest river. Environment Waikato and Centre for Biodiversity and Ecology Research (University of Waikato). p155.

Hicks BJ. 2010. Warm-water introductions. IN: Collier KJ, Hamilton D, Vant W, Howard-Williams C (ed.s). The Waters of the Waikato: Ecology of New Zealand's longest river. Environment Waikato and Centre for Biodiversity and Ecology Research (University of Waikato). p210.

Hicks BJ. 2010. Stable isotopes and energy flow.
IN: Collier KJ, Hamilton D, Vant W, Howard-Williams C (ed.s). The Waters of the Waikato: Ecology of New Zealand's longest river. Environment Waikato and Centre for Biodiversity and Ecology Research (University of Waikato). p222.

Hopkins A. 2010. A Ngaati Hine hapu perspective on changes in ecology and water quality of Lake Waikare. IN: Collier KJ, Hamilton D, Vant W, Howard-Williams C (ed.s). The Waters of the Waikato: Ecology of New Zealand's longest river. Environment Waikato and Centre for Biodiversity and Ecology Research (University of Waikato). p246.

Howard-williams C, Vant WN, Collier KJ, Hamilton DP. 2010. The river: past, present and future. IN: Collier KJ, Hamilton D, Vant W, Howard-Williams C (ed.s). The Waters of the Waikato: Ecology of New Zealand's longest river. Environment Waikato and Centre for Biodiversity and Ecology Research (University of Waikato). Part 5. Chapter 15. p281-.

Landman MJ, Bleackley NA, Ling N, van den Heuvel MR. 2010. Physiological health of common bully (Gobiomorphus cotidianus) in the Tarawera and Rangitaiki Rivers of New Zealand: evidence of diminished ecological effects of pulp and paper effluents in wild fish populations.Water Quality Research Journal of Canada 45 (2): 223-233.

Ling N. 2010. Socio-economic drivers of freshwater fish declines in a changing climate: a New Zealand perspective.Journal of Fish Biology 77 (8): 1983-1992. DOI: 10.1111/j.1095-8649.2010.02776.x

Luo L, Hamilton D, Han B. 2010. Estimation of total cloud cover from solar radiation observations at Lake Rotorua, New Zealand.Solar Energy 84 (3): 501-506. DOI: 10.1016/j.solener.2010.01.012

Makino W, Knox MA, Duggan IC. 2010. Invasion, genetic variation and species identity of the calanoid copepod Sinodiaptomus valkanovi.Freshwater Biology 55 (2): 375-386. DOI: 10.1111/j.1365-2427.2009.02287.x

Matsuzaki SS, Mabuchi, K, Takamura N, Hicks BJ, Nishida M, Washitani I. 2010. Stable isotope and molecular analyses indicate that hybridization with non-native domesticated common carp influence habitat use of native carp.Oikos 119 (6): 964-971. DOI: 10.1111/j.1600-0706.2009.18076.x.

Mooij WM, Trolle D, Jeppesen E, Arhonditsis G, Belolipetsky PV, Chitamwebwa DBR, Degermendzhy AG, DeAngelis DL, De Senerpont Domis LN, Downing AS, Elliott JA, Fragoso Jr CR, Gaedke U, Genova SN, Gulati RD, Håkanson L, Hamilton DP, Hipsey MR, 't Hoen J, Hülsmann S, Los FJ, Makler-Pick V, Petzoldt T, Prokopkin IG, Rinke , K, Schep SA, Tominaga K, Van Dam AA, Van Nes EH, Wells SA, Janse JH. 2010. Challenges and opportunities for integrating lake ecosystem modelling approaches.Aquatic Ecology 44 (3): 633-667. DOI: 10.1007/s10452-010-9339-3

Nishri A, Hamilton DP. 2010. A mass balance evaluation of the ecological significance of historical nitrogen fluxes in Lake Kinneret.Hydrobiologia 655 (1): 109-119. DOI: 10.1007/s10750-010-0408-3

Özkundacki D. 2010. Speciation and dynamics of phosphorus in relation to lake restoration methods.PhD thesis, University of Waikato, Hamilton. 218p. http://researchcommons.waikato.ac.nz/handle/10289/3969

Özkundakci D, Hamilton D, Scholes P. 2010. Effect of intensive catchment and in-lake restoration procedures on phosphorus concentrations in a eutrophic lake.Ecological Engineering 36 (4): 396-405. DOI: 10.1016/j.ecoleng.2009.11.006

Parkyn S, Collier K, David B, Davies-Colley R, Matheson F, Quinn J, Shaw R, Storey R. 2010. The restoration indicator toolkit: Indicators for monitoring the ecological success of stream restoration.Envirolink report, National Institute of Water and Atmospheric Research Ltd, Hamilton, 134 p.

Pearson LK, Hendy CH, Hamilton DP, Pickett RC. 2010. Natural and anthropogenic lead in sediments of the Rotorua lakes, New Zealand. Earth and Planetary Science Letters 297 (3-4): 536-544. DOI: 10.1016/j.epsl.2010.07.005

Peters NE, Böhlke JK, Brooks PD, Burt TP, Gooseff MN, Hamilton DP, Mulholland PJ, Roulet NT, Turner JV. 2010. Hydrology and biogeochemistry linkages. IN: Wilderer P (ed.). Treatise on Water Science, Oxford: Academic Press. Vol. 2, pp. 271-304.

Sutherland DL, Hogg ID, Waas JR. 2010. Phylogeography and species discrimination in the Paracalliope fluviatilis species complex (Crustacea; Amphipoda): can morphologically similar heterospecifics identify compatible mates?Biological Journal of the Linnean Society 99 (1): 196-205. DOI: 10.1111/j.1095-8312.2009.01344.x

Trolle D, Hamilton DP, Pilditch CA. 2010. Evaluating the influence of lake morphology, trophic status and diagenesis on geochemical profiles in lake sediments.Applied Geochemistry 25 (5): 621-632.DOI: 10.1016/j.apgeochem.2010.01.003

Verburg P, Hamill K, Unwin M, Abell J. 2010. Lake water quality in New Zealand 2010: Status and trends. NIWA Client Report: HAM2010-107.

Von Westernhagen N, Hamilton DP, Pilditch CA. 2010. Temporal and spatial variations in phytoplankton productivity in surface waters of a warm-temperate, monomictic lake in New Zealand. Hydrobiologia 652 (1): 57-70. DOI: 10.1007/s10750-010-0318-4

Von Westernhagen N. 2010. Measurements and modelling of eutrophic processes in Lake Rotoiti.PhD thesis, University of Waikato, Hamilton. 168p. http://researchcommons.waikato.ac.nz/handle/10289/4817

Wood SA, Heath M, Kuhajek J, Ryan K. 2010. Fine scale spatial variability of anatoxin-a and homoanatoxin-a production in benthic cyanobacteria; implication for monitoring and management.Journal of Applied Microbial Ecology 109 (6): 2011-2018. DOI: 10.1111/j.1365-2672.2010.04831.x

Wood SA, Prentice MJ, Smith K, Hamilton DP. 2010. Low dissolved inorganic nitrogen and increased heterocyte frequency: precursors to Anabaena planktonica blooms in a temperate, eutrophic reservoir. Journal of Plankton Research 32 (9): 1315-1325. DOI: 10.1093/plankt/fbq048

Wood SA. 2010. Toxic blue-green algae. IN: Collier KJ, Hamilton D, Vant W, Howard-Williams C (ed.s). The Waters of the Waikato: Ecology of New Zealand's longest river. Environment Waikato and Centre for Biodiversity and Ecology Research (University of Waikato). p120.

Zhang C. 2010. High frequency monitoring and three-dimensional modelling of temporal variations in water quality of Lake Rotorua, New Zealand.MSc thesis, University of Waikato, Hamilton. 68p.http://researchcommons.waikato.ac.nz/handle/10289/5009