Ashraf S, Brabyn L, Hicks BJ. 2009. Remote sensing of freshwater Environments: Trial application in the Lower Waikato River. CBER Contract Report No. 101. For Department of Conservation. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Balvert S, Duggan IC, Hogg I. 2009. Zooplankton seasonal dynamics in a recently filled mine pit lake: the effect of non-indigenous Daphnia establishment. Aquatic Ecology 43 (2): 403-413. DOI: 10.1007/s10452-008-9165-z

Banks J, Duggan IC. 2009. Lake construction has facilitated calanoid copepod invasions in New Zealand. Diversity and Distributions 15 (1): 80-87. DOI: 10.1111/j.1472-4642.2008.00524.x

Banks JC, Hicks BJ. 2009. Genetic identification of fish.CBER Contract Report No. 109. for CBER. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. 26pp. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Blair JM,  Hicks BJ. 2009. Otolith chemistry, stomach contents and stable isotope analysis of a snapper (Pagrus auratus) caught in the Waikato River at Ngaruawahia.  CBER Contract Report No. 110. for CBER. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Blair JM,  Hicks BJ. 2009. An investigation to determine origin: age and otolith chemistry of a brown bullhead catfish (Ameiurus nebulosus) found at Okawa Bay, Lake Rotoiti. CBER Contract Report No. 98. For Department of Conservation. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Bleackley N, Landman M, Ling N. 2009. Ecology of common bully (Gobiomorphus cotidianus) in the Tarawera and Rangitaiki Rivers: isolation by inland distance or anthropogenic discharge? New Zealand Journal of Marine and Freshwater Research 43, 889-899. DOI: 10.1080/00288330909510047.

Brijs J, Hicks BJ, Bell D. 2009. Boat electrofishing survey of common smelt and common bullies in the Ohau Channel in December 2008.CBER Contract Report No. 97. For Environment Bay of Plenty. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Brijs J, Hicks BJ, Ling N, Bell D. 2009. Pest fish survey of Hokowhitu (Centennial) Lagoon, Palmerston North. CBER Contract Report No. 103. For Environment Waikato. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Brijs J, Hicks BJ, Powrie WS. 2009. Spatial and temporal abundance of mysid shrimp (Tenagomysis chiltoni) in shallow lakes in the Waikato region.CBER Contract Report No. 107. For Environment Bay of Plenty. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. 26pp. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Brijs J, Ling N. 2009. Utuhina Stream monitoring 2009: fish and aquatic invertebrates.  CBER Contract Report No. 106. Client Report prepared for Environment Bay of Plenty. Centre for Biodiversity and Ecology Research, Department of Biological Sciences, School of Science and Engineering, University of Waikato, Hamilton. 17pp. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Brookes JD, Hamilton DP. 2009. Lakes and reservoirs of Australia and New Zealand. Encyclopedia of Inland Waters, Oxford: Elsevier. Vol. 2, pp. 513-523. DOI: 10.1016/B978-012370626-3.00037-5

Campbell K, Hicks BJ. 2009. Review of gambusia (Gambusia affinis: Poeciliidae) from a New Zealand perspective. CBER Contract Report No. 99. For Department of Conservation. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Carter KS. 2009. Pest or pastime? Coarse fish in Aotearoa/New Zealand.MSoc.Science thesis, University of Waikato, Hamilton.172p. http://researchcommons.waikato.ac.nz/handle/10289/2790

Collier KJ, Aldridge BMTA, Hicks BJ, Kelly J, Macdonald A, Smith BJ, Tonkin J. 2009. Ecological values of Hamilton urban streams (North Island, New Zealand): constraints and opportunities for restoration.New Zealand Journal of Ecology 33 (2): 177-189. http://www.newzealandecology.org/nzje/

Collier KJ, Hamer M, Chadderton WL. 2009. A new artificial substrate for sampling deep river macroinvertebrates.New Zealand Natural Sciences 34: 49-61. http://www.nznaturalsciences.org.nz/

Daniel AJ, Hicks BJ, Ling N, David B. 2009. Acoustic and radio transmitter retention in common carp (Cyprinus carpio L.) in New Zealand. Marine and Freshwater Research 60 (4): 328-333. DOI: 10.1071/MF08139

David B, Hamer M, Collier KJ. 2009. Mussel spat ropes provide passage for banded kokopu in laboratory trials.New Zealand Journal of Marine and Freshwater Research 43 (4): 883-888. DOI: 10.1080/00288330909510046

Ellery PM, Hicks BJ. 2009. Restoration of floodplain habitats for inanga (Galaxis maculatus) in the Kaituna River, North Island, New Zealand. New Zealand Natural Sciences 34: 39-48. http://www.nznaturalsciences.org.nz/

Entry JA, Sojka RE, Hicks BJ. 2009. Matrix-based fertilizers reduce nutrient and bacterial leaching after dairy manure application. IN: Nutrient management in a rapidly changing world. (eds: Currie LD, Lindsay CL). Occasional Report No. 22. Fertilizer and Lime Research Centre, Massey University, Palmerston North. pp155-172.

Fowler EC, Duggan IC. 2009. Assessment of trophic state change in selected lakes of the Auckland region based on Rotifer Assemblages: 2005-2008.ARC Technical Report TR2009/001. Report to Auckland Regional Council.

Gillon N, White P, Hamilton DP. 2009. Groundwater in the Okataina caldera: model of future nitrogen loads to Lake Tarawera.CBER Contract Report No. 94. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Hamilton DP, Paul WJ, McBride C, Immenga D. 2009. Water flow between Ohau Channel and Lake Rotoiti following implementation of a diversion wall. CBER Contract Report No. 96. For Environment Bay of Plenty. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. 36p. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Hicks BJ, Brijs J, Bell D. 2009. Boat electrofishing survey of Lake Roto Kaeo, Hamilton.CBER Contract Report No. 93. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Hicks BJ, Brijs J. 2009. Boat electrofishing survey of the upper Turitea Reservoir, Palmerston North. CBER Contract Report No. 100. For Department of Conservation. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Hicks BJ, Brijs J. 2009. Boat electrofishing survey of Lake Ngaroto.CBER Contract Report No. 111. For Waipa District Council. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Hogg ID, Smith, BJ, Banks JC, Dewaard JR, Hebert PDN. 2009. Testing the utility of mitochondrial COI sequences for the identification and phylogenetic analysis of New Zealand caddisflies (Trichoptera). New Zealand Journal of Marine and Freshwater Research 43: 1137-1146. DOI: 10.1080/00288330.2009.9626536

Ling N. 2009. Proposed monitoring of Northland mudfish (Neochanna heleios) in the Waitangi Forest wetlands: effects of increased sewage effluent discharge.CBER Contract Report No. 108. For Department of Conservation. Centre for Biodiversity and Ecology Research, School of Science and Engineering, University of Waikato, Hamilton. 10 pp. http://www.waikato.ac.nz/eri/research/publications/cber-reports

Ling N. 2009. Management of invasive fish.IN: Clout MN, Williams PA (eds). Invasive species management. A handbook of principles and techniques. Techniques in Ecology and Conservation Series. Oxford University Press. Pp 185-204.

O'Rorke R. 2009. Correlations between a cyanobacteria bloom's decline and environmental dynamics.MSc thesis, University of Waikato, Hamilton. 133p. http://researchcommons.waikato.ac.nz/handle/10289/3582

Osborne M, Ling N, Hicks B, Tempero G. 2009. Movement, social cohesion, and site fidelity by adult koi carp, Cyprinus carpio L. Fisheries Management and Ecology 16 (3): 169-176. DOI: 10.1111/j.1365-2400.2009.00652.x

Pouwels A, Hamilton DP, Arzberger PW, Kratz TK, Lin F-P. 2009. Use of lake sensor data in student education.International Association of Theoretical and Applied Limnology Proceedings 30 (Pt 5): 673-676.

Rueckert A, Cary SC. 2009. Use of an armored RNA standard to measure microcystin synthetase E gene expression in toxic Microcystis sp. by reverse transcription QPCR. Limnology and Oceanography-Methods 7: 509-520. DOI: 10.4319/lom.2009.7.509

Stevens MI, Hicks BJ. 2009. Mitochondrial DNA reveals monophyly of New Zealand's Gobiomorphus (Teleostei: Gobioidei: Eleotridae) amongst a morphological complex.Evolutionary Ecology Research 11 (1): 109-123.

Tana R. 2009. Population dynamics and migrational history of torrentfish (Cheimarrichthys fosteri, Haast 1874) in two Waikato streams on the North Island of New Zealand.MSc thesis, University of Waikato, Hamilton. 83p.http://researchcommons.waikato.ac.nz/handle/10289/3271

Trolle D, Zhu G, Hamilton DP, Luo L, McBride C, Zhang L. 2009. The influence of water quality and sediment geochemistry on the horizontal and vertical distribution of phosphorus and nitrogen in sediments of a large, shallow lake. Hydrobiologia 627: 31-44. DOI: 10.1007/s10750-009-9713-0

Trolle D. 2009. The influence of sediment nutrient dynamics on the response of lake ecosystems to restoration and climate change. PhD thesis, University of Waikato, Hamilton. 140p.http://researchcommons.waikato.ac.nz/handle/10289/2808

Wood SA, Hamilton DP, Paul WJ, Safi KA, Williamson WM. 2009. New Zealand guidelines for managing cyanobacteria in recreational waters. Ministry for the Environment and Ministry of Health. Prepared for the Ministry for the Environment and the Ministry of Health. Ministry for the Environment, Wellington.. 89 p.

Wood SA, Jentzsch K, Rueckert A, Hamilton DP, Cary SC. 2009. Hindcasting cyanobacterial communities in Lake Okaro with germination experiments and genetic analyses. FEMS Microbiology Ecology 67 (2): 252-260. DOI: 10.1111/j.1574-6941.2008.00630.x